WWW Computational Chemistry Resources

This list of resources is designed to provide computational chemists, students and other people interested in the CAUT Computational Chemistry project with a list of useful web sites related to computational chemistry and molecular modelling.
[This page is a mirror of the page on the main CAUT page.]
 

 

 The resources are divided into:

 

  1. General chemistry
  2. Chemistry education
  3. Computational chemistry Resources
  4. Molecular modelling
  5. Computational Chemistry software Sites
  6. Java and VRML for Computational Chemistry
  7. Conferences
  8. Some Australian web sites
  9. Other interesting WWW sites
  10. WWW search engines and General FTP sites
  11. Mailing lists
  12. USENET Newsgroups
  13. The URL update form

 

Interesting general chemistry resources

The Australian Chemistry Network

 The Australian Chemistry Network list of Chemistry Resources on the Web

 Joey Santos' WebChemistry Index

 Beilstein Information Systems

 The Free University, Berlin Chemistry Index (very comprehensive)

 The Yahoo Chemistry Index

 Rolf Claessen's Chemistry list

 Soaring Bear's science internet resources

 World Wide Web Virtual Library: Biosciences

 World Wide Web Virtual Library: Chemistry

 BetaCyte List of Chemistry Journals

 World Wide Web Virtual Library: Crystallography

 The SDSU Chemistry Information Reference

 The database of chemistry databases

 Silicon Graphics' Chemistry and Biological Sciences resources

 Virginia Tech's Chemistry Information on the Internet

 WebElements - The periodic table via WWW

 MIME types for Chemistry

 Network Science - an electronic journal for those in the chemical, pharmaceutical and biotechnology industries

 A guide to implementing Chemical MIME

 YARLYet An other Resource List

 

 

Chemistry education resources

The Australian Chemistry Network Teaching Resources Guide

 VisChemVisualising the molecular world

 Teaching guide X-ray diffraction

 MultiCHEM

 CAOS/CAMM Center, Computational Chemistry and Biochemistry Tutorials

ChemEd - part of the SciEd Science and Mathematics Education Resources

 Chemistry Teaching Resources on the Internet

 The CCQC Book of Knowledge

 The ChemPrime Project

 Computational Chemistry for Chemistry Educators

 Global Instructional Chemistry

 Hartree-Fock theory notes

 Instructional Software for Chemistry - Educational resources for computer-aided chemistry teaching

 The Journal of Chemical Education

Mike Colvin's Quantum Chemistry Class

 Martindale's: Chemistry THE "VIRTUAL" - CHEMISTRY CENTER

Molecular Monte Carlo

 NCSA Computational Chemistry Software Packages

The NSCS on-line Computational Chemistry for Chemistry Educators course

 The Principles of Protein Structure course

 The Silicon Graphics Teaching Laboratory

 Uniserve - education conference listings

 1996 Chemistry Education Conference; New Initiatives in Chemical Education.

 

Computational chemistry resources

ACS Division of Computers in Chemistry

 ACS Division of Physical Chemistry

 Richard Bader's Theory of Atoms and Molecules.

 Biocomputing and Molecular Modelling at the University of Zurich

 David Sherill's Brief Review of Elementary Quantum Chemistry

 The CCL Computational Chemistry Mailing List

 The CCL Computational Chemistry Archives

 The CCL Computational Chemistry related sites list

 CML Chemical Markup Language

 Computational chemistry at CSC (Finland)

 The EMSL Gaussian Basis Set order form

 Computational Chemistry at Sandia National Laboratories

 Sandia's on-line Gaussian 92 water calculations

 Ab initio Water Calculation - do-it-yourself quantum chemistry across the web using object oriented code!

 Mike Colvin's on-line ab initio quantum chemistry laboratory

 NCSA Computational Chemistry Group

 QCPE Quantum Chemistry Program Exchange

 "Relativistic Theory of Atoms and Molecules I-II" database

 Reviews in Computational Chemistry

 Richard Rothwell's home page - molecular and molecular orbital graphics

 David Young's selected Topics in Computational Chemistry

The UK Computational Chemistry Working Party

 The University of Georgia's Center for Computational Quantum Chemistry

 World Association of Theoretical Organic Chemists (WATOC)

 Mathematical Challenges from Theoretical/Computational Chemistry

 Practical Exercises in Quantum Chemistry at ETH Zürich

Quantum Theory Project; An Institute for Theory and Computation in Molecular and Material Sciences.

Standardization of computational chemistry software

 

 

Molecular modelling resources

Automatic format conversion of molecular structure files by Corina

 The Brookhaven Protein Data Bank

 The Cambridge Crystallographic Data Centre

 The Chemist's Art Gallery

 Computational Biochemistry Research Group in Zurich Programs include AllAll (phylogenic trees), MultAlign etc

Concepts in Science through Molecular Modelling

 EMBL The European Molecular Biology Laboratory

 EMBL Scientific Computational Facilities and Services including BLAST, FASTA, DALI, PREDICTPROTEIN

 The Journal of Computer-Aided Molecular Design

 TMMeC The Molecular Modeling Electronic Conference; a Peer reviewed web chemistry journal

 MathMol: What is Molecular Modelling?

 Molecular Biology Resource

 NAB - The Nucleic Acid Builder

 The NCBI Structure group

 NCSA BIOLOGY WORKBENCH

 The NIH Guide to Molecular Modelling

 PDB at a glance

 Protein Science - the electronic journal of the Protein Society

 Protein Sequence Analysis and Structure Prediction at BMERC

The UCSF Computer Graphics Laboratory

 University of Reading, Chemistry Department - Computational Chemistry and Modelling Group

 

 

Computational Chemistry software sites

Analytic Surface Calculation

 ACES II Advanced Concepts in Electronic Structure

ADF Amsterdam Density Functional program

 AMBER - Molecular simulation programs

 ATMOL an ab initio program

 AutoDock Automated Docking of Flexible Ligands to Macromolecules

 Babel - file format converter (ftp site)

 CACTVS A Chemistry Algorithm Development Environment

 CADCOM MOLECULAR MODELING on a PC

CADPAC -- The Cambridge Analytic Derivatives Package

 CambridgeSoft Corporation (ChemDraw etc)

 CAMO Software: specialises in multivariate data analysis software, in particular Unscrambler

 Chemistry, biochemistry and biotechnology software for Silicon Graphics computers

 Chemistry software for MS-DOS

 Chemistry software for MS-Windows

 ChemWeb from SoftShell Online: a tool for creating chemical structure images for HTML documents

 Cn3D See in Three-Dee for the Macintosh

 COLUMBUS general ab initio electronic structure calculations

 CRYSTAL - ab initio electronic structure calculations on periodic systems.

 CrystalMaker Real-time crystallography for personal computers

 DALTON; Program for ab initio calculation of molecular properties by SCF, MP2 and MCSCF.

 DeFT - A gaussian density functional program

 DOCK docking" molecules

EyeChem - Explorer modules for molecular modelling

 ExPASy Access Swiss-Model Automated Protein Modelling Server, Prosite databases etc

 FlexX automatic prediction of receptor-ligand interactions

 GAMESS (US) - general ab initio program

 GAMESS (UK) - general ab initio program; not the same program as above.

 GAP (Geometric analysis programs)

 Gaussian: The Official Home Page

gOpenMol - Graphics Interface to the OpenMOl programs

 GRAMM Global Range Molecular Matching

 GRASP Graphical Representation and Analysis of Structural Properties

GROMACS Molecular Dynamics on Parallel Computers

 GROMOS Dynamic Modelling of Molecular Systems

 HDBPLUS Hydrogen Bond Calculation Program

 HYDRO calculation of hydrodynamic properties

 HyperCube - HyperChem, ChemPlus and HyperNMR

 LIGPLOT Program for automatically plotting protein-ligand interactions

 MacroModel - Molecular Modelling

 MOLDEN visualization of molecular and electronic structure

 MOLDRAW Molecules and crystals on a personal computer

 Molecule for Macintosh which can also run on a PC using ARDI's Executor

 The Molecular Modelling Toolkit

 MolEdit - an editor for quantum chemistry input files

 MolGen - Molecular modelling for PCs

 MolPro an ab initio package by H.-J. Werner and P. J. Knowles

 MSI/Biosym Molecular Modelling Software

 MOLSCAT - Quantum non-reactive molecular scattering program

 MDL Products - including Chime, ISIS/Draw and ISIS/Base

 Molscript - molecular graphics as Postscript files

 MolView and Molview Lite - Molecular rendering for the Macintosh

 Moviemol - the molecular animation program

 MSI/Biosym home page - Molecular Modelling software

 MultiSimplex - for rapid experimental optimization

 NAB molecular manipulation language

 The NIH software index

 OpenMol OpenMol Community

 Oxford Molecular computer-aided chemistry and bioinformatics software

 PEP Protein Electrostatics.

 PMD - Parallel Molecular Dynamics

 PovChem Combining chemistry and ray tracing

 PCMODEL small molecule modeling program

Prometheus Software for Molecular Design

 PSI 2.0 - Wavefunction Evaluator

 Python source code for computational chemistry

 Quantum Chemistry Program Packages

 Rasmol - Molecular visualisation program:

 

Raster3D - 3D molecular graphics generator

 Re_View - Dynamic reaction data visualization and analysis tool

 Schrödinger Inc. - Electronic structure software

 Software Reviews from the CTI Centre for Chemistry

 SOLPRO prediction of Solution Properties of rigid macromolecules and bioparticles

 SPROUT de novo ligand design

 STALK: A Molecular Docking System

 Steric: A program to calculate molecular steric effects

 TINKER package for molecular mechanics and dynamics

 TransCube, TransFreq, Molnf and Scian Programs for visualising Gaussian 94 output and Scientific Visualisation

 SYBYL - software from Tripos

 TURBOLMOL ab initio electronic structure calculations -mainly on the SCF level of theory

Viseur visualize G Protein-Coupled Receptors

 Wavefunction Inc. - makers of Spartan, etc.

 WHAT IF protein structure analysis program

 UNICHEM molecular modeling package

 VIEWMOL graphical front end for some quantum chemical and molecular modelling programmes

 VMD - Visual Molecular Dynamics

 XMol - An X Windows-based molecule rendering and animation package and the XMol FAQ

 

 

Java and VRML for Computational Chemistry

Java information and Java applets

 Chemical Java - Examples and Tutorials

 Tripos's Websketch

 Java Water Calculation

 Quantum wave scattering

 3D stereo pair modeller

 Java molecular modelling example #1

 Java molecular modelling example #2

 Java molecular modelling example #3

 Equation rendering using Java

 Java Chemistry Page from R Muller

Indiana University Molecular Structure Center

 Least Squares Fit to Lennard-Jones Potential
Chemical examples of VRML (virtual reality)

 VRML in Chemistry at Darmstadt

 Xtal-3dVRML 3D-visualisation

 VRML A Crystallographer's Guide to Internet Tools and Resources

 

 

Conferences

The AusWeb97 WWW conferences

 The computational chemistry conference database

 The 1st Electronic Computational Chemistry Conference

 The 2nd Electronic Computational Chemistry Conference

 Yahoo's index of Chemistry conferences

 

 

Some Australian web sites

Guide to Australia

 The Annotated Australian Address Book

 Goanna - the guide to Australian net services

 The Australian web site listing

 The Little Aussie Web Wombat Australian Search Engine! - specifically for Australian Web Sites

 Australian educational resources

 ANU Bioinformatics hypermedia service

 The CAUT (Committee for the Advancement of University Teaching) home page

 The four universities involved in the CAUT Computational Chemistry Project:

Northern Territory University

 Swinburne University of Technology

 The University of Tasmania

 The Victorian College of Pharmacy (Monash University)

 

 

Other interesting sites

www.eit.com: PharmInfoNet - Pharmaceutically related information

 The Numerical Algorithms Group

 New Scientist: Planet Science

 SciEd: Science and Mathematics Education Resources

 The Globewide Network Academy

 Virtual reality via the WWW - VRML at NCSA

 The Best of the Web contest

 Popular web browser home pages:

 

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Have a look at the 'Properly setting your web browser' tutorial.

 

 

 Web search tools and General FTP Sites

 

Related mailing lists

Configuring mail readers to handle Chemical MIME

 Overview of chemical mailing lists - mirrored from Belgium.

 The CCL Computational Chemistry mailing list

 

 

Related newsgroups

Bionet newsgroups:
bionet.biology.computational
bionet.journals.content
bionet.molbio.embldatabank
bionet.software
bionet.software.sources
bionet.software.www
bionet.structural-nmr
bionet.xtallography

 

Science newsgroups:
sci.answers
sci.chem
sci.polymers

 

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